Skip navigation links
Navigation
Triton Resource Node Status
Tuesday, February 9th 2010 03:29:01 PM PST
TCC Rack 5 Nodes Down (1)
tcc-5-38.local
Total TCC Nodes Up: 253
Total 256GB (PDAF) Nodes Up: 20
Total 512GB (PDAFM) Nodes Up: 8
Rack 2 Up Count: 80
Rack 3 Up Count: 80
Rack 4 Up Count: 14
Rack 5 Up Count: 79
Section Navigation
Running Jobs on Triton
More about Triton Resource
Triton Resource Software Packages
Software Available to All Users
Details of this page are being developed and links will be added to this page as they become available. Thank you for your patience.
If you need software that is not listed here or is not installed on Triton, please send a request to the Triton Discussion List, specifying the package, version, and relevant licensing info, if any. Users may install proprietary and privately licenced software on Triton in their home directories or in private locations.
The initial application software stack has been installed and tested on Triton. Following is a partial list of the software resources available to Triton users.
Application Software | |||||
| Package | Topic Area | Version | License Type | Package Home Page | User Install Location |
|---|---|---|---|---|---|
| bbFTP | Large Parallel File Transfer | 3.2.0 | GNU GPL | bbFTP Home Page | /opt/bbftpc |
| DDT | Graphical Parallel Debugger | 2.4 | Licensed | DDT Home Page | /home/beta/ddt |
| GAMESS | Chemistry | 1.2009 | No-cost Site License | GAMESS Home Page | /opt/pgi/gamess |
| Lustre | Scalable File System | 1.8 | GNU GPL | Lustre Home Page | /opt/lustre |
| NWChem | Chemistry | 5.1.1 | EMSL (free) | NWChem Home Page | /home/beta/nwchem_pgi |
| R | Statistical Computing and Graphics | 2.9.2 | GNU GPL | R Home Page | /opt/R/bin |
| Star-P | General Parallel Application Development (MATLAB) | 2.8 | Licensed | Star-P Home Page | /opt/starp-2.8.0 |
System Software | |||||
| Package | Topic Area | Version | License Type | Package Home Page | User Install Location |
| Moab | Workload Scheduler | 5.3.5 | License | Moab Home Page | /opt/moab |
| alpha | N/A | TBD | Generic | alpha Home Page TBD | /opt/? |
| web-server | N/A | TBD | Generic | web-server Home Page TBD | /opt/? |
| triton-config | N/A | TBD | Generic | triton-config Home Page TBD | /opt/? |
| xen | N/A | TBD | Generic | xen Home Page TBD | /opt/? |
| plink | N/A | TBD | Generic | plink Home Page TBD | /opt/plink |
| CentOS | Operating System | 5.3 | Open Source | CentOS Home Page | N/A |
| hpc | N/A | TBD | Generic | hpc Home Page TBD | /opt/? |
| Environment Modules | Environment Variable Management | 3.2.7 | GNU GPL | Environment Modules Home Page | /opt/modules |
| kernel-triton | N/A | TBD | Generic | triton kernel Home Page TBD | /opt/? |
| base | N/A | TBD | Generic | Base Home Page TBD | /opt/? |
| queue-config | N/A | TBD | Generic | queue-config Home Page TBD | /opt/? |
| Ganglia | N/A | 2.5.7 | Open Source | Ganglia Home Page | /opt/ganglia |
| Nagios | N/A | 3.2.0 | Open Source | Nagios Home Page | /opt/nagios |
| myrinet_mx | N/A | TBD | Generic | myrinet_mx Home Page TBD | /opt/mx |
| IDL | N/A | TBD | Generic | IDL Home Page TBD | /opt/idl |
| TORQUE | Resource Manager | 2.3.6 | Open Source | TORQUE Home Page | /opt/torque |
| Gold | Allocation Manager | 2.1.7 | Open Source | Gold Home Page | /opt/gold |
Compilers | |||||
| Package | Topic Area | Version | License Type | Package Home Page | User Install Location |
| Java | Compiler | 1.6.0_07 | Generic | Java Home Page | /usr/bin/javac |
| PGI Compilers | C and Fortran Compilers | 8.0 | Licensed (flexlm) | PGI Compilers Home Page | /opt/pgi |
| Intel Compilers | C and Fortran Compilers | 11.1 | Licensed (flexlm) | Intel Compilers Home Page | /opt/intel |
| FFTW | General | 3.2.2 | GNU GPL | FFTW Home Page | /opt/pgi/fftw_pgi |
| NetCDF | General | 4.0.1 | Licensed (free) | NetCDF Home | Environment Module |
| openmpi_pgimx | N/A | TBD | Generic | openmpi_pgimx Home Page TBD | /opt/openmpi_pgimx |
| nco_pgi | N/A | TBD | Generic | nco_pgi Home Page TBD | /opt/? |
| flexlm | Compiler License Manager | 5.1 | Floating | Portland Group Home Page | /opt/flexlm |
| Package | Topic Area | Version | License Type | Package Home Page | User Install Location |
Usage Examples
bbFTP
See a discussion of Triton file transfer options, with emphasis on bbFTP, including syntax and examples, on the File & Data Transfer page.
DDT
Usage
/home/beta/ddt/bin/ddt
GAMESS
Usage
PGI:
/opt/pgi/gamess/rungms gamess_input 00 num_procs > output_file
Intel:
/opt/intel/gamess/rungms gamess_input 00 num_procs > output_file
NWChem
Usage
/opt/pgi/mpichmx_pgi/bin/mpirun -np num_nprocs -machinefile $PBS_NODEFILE /home/beta/nwchem_pgi/bin/nwchem input_file > output_file
/opt/pgi/mpichmx_inteli/bin/mpirun -np num_procs -machinefile $PBS_NODEFILE /home/beta/nwchem_intel/bin/nwchem input_file > output_file
NetCDF
Usage Example
module [ load | add ] netcdf
This will put netCDF into your path and add the appropriate environment variables. You will then be able to link the netCDF libraries when compiling C/C++ and Fortran codes.
Star-P
Usage
Please access the PDF documentation suite located on Triton at /opt/starp-2.8.0/server/doc/Manuals. Star-P clients are typically started from a remote workstation.
Modules
Also see local documentation on the Environment Modules page of this site.
Usage Examples
module [ load | unload ] module_name
module [ list | avail ]
module switch module_1 module_2
Discrete Fourier Transform Library (FFTW)
PGI Version
- PGI C/C++ Compiler
- PGI Fortran Compiler
Software : FFTW PGI Library Roll : fftw_pgi Location : /opt/pgi/fftw_pgi Include : /opt/pgi/fftw_pgi/include Lib : /opt/pgi/fftw_pgi/lib
PGI Usage
C interface:
pgcc -o fftw-testc fftw-test.c -I/opt/pgi/fftw_pgi/include -L/opt/pgi/fftw_pgi/lib -lfftw3
FORTRAN interface:
pgf90 -o fftw-testf fftw-test.f -I/opt/pgi/fftw_pgi/include -L/opt/pgi/fftw_pgi/lib -lfftw3
Intel Version
- INTEL C/C++ Compiler
- INTEL Fortran Compiler
Software : FFTW Intel Library Roll : fftw_intel Location : /opt/intel/fftw_intel Include : /opt/intel/fftw_intel/include Lib : /opt/intel/fftw_intel/lib
Intel Usage
C interface:
icc -o fftw-testc fftw-test.c -I/opt/intel/fftw_intel/include -L/opt/intel/fftw_intel/lib -lfftw3
FORTRAN interface:
ifort -o fftw-testf fftw-test.f -I/opt/intel/fftw_intel/include -L/opt/intel/fftw_intel/lib -lfftw3
Intel Compilers
Also see local documentation on the Compiling Jobs and Compiling Parallel Codes pages of this site.
Usage Examples
All compiler executables are located in /opt/intel/Compiler/11.1/046/bin/intel64
C usage:
icpc [c_file or c++_file]
C++ usage:
icc [c_file or c++_file]
Fortran77 usage:
ifort [fortran_file]
Fortran90 usage:
ifort [fortran90_file]
PGI Compilers
Also see local documentation on the Compiling Jobs and Compiling Parallel Codes pages of this site.
Usage Examples
All compiler executables are located in /opt/pgi/linux86-64/8.0/bin
C usage:
pgcc [c_file]
C++ usage:
pgCC [c++_file]
Fortran77 usage:
pgf77 [fortran_file]
Fortran90 usage:
pgf90 [fortran90_file]
R Statistical and Graphics Environment
R is installed on the compute nodes of Triton. It can be run from an interactive session with the command /opt/R/bin/R. You can get an interactive session via qsub -I (or qsub -I -q small if you only need one processor).
On This Page
Contact Us
Open a Ticket with Triton Resource Support using the Support Ticket Form.
Join the Discussion Forum Sign up for our Email Discussion List.
FAQ Read the FAQ Page.
Official Web site of the University of California, San Diego
University of California, San Diego, 9500 Gilman Dr., La Jolla, CA 92093
(858) 534-2230
Copyright ©2010 Regents of the University of California. All rights reserved.