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Triton Resource Node Status

Tuesday, February 9th 2010 03:29:01 PM PST


TCC Rack 5 Nodes Down (1)

tcc-5-38.local

Total TCC Nodes Up: 253

Total 256GB (PDAF) Nodes Up: 20

Total 512GB (PDAFM) Nodes Up: 8

Rack 2 Up Count: 80

Rack 3 Up Count: 80

Rack 4 Up Count: 14

Rack 5 Up Count: 79

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Triton Resource Software Packages

Software Available to All Users

Details of this page are being developed and links will be added to this page as they become available. Thank you for your patience.

If you need software that is not listed here or is not installed on Triton, please send a request to the Triton Discussion List, specifying the package, version, and relevant licensing info, if any. Users may install proprietary and privately licenced software on Triton in their home directories or in private locations.

The initial application software stack has been installed and tested on Triton. Following is a partial list of the software resources available to Triton users.

Installed Software on Triton Resource

Application Software

Package Topic Area Version License Type Package Home Page User Install Location
bbFTP Large Parallel File Transfer 3.2.0 GNU GPL bbFTP Home Page /opt/bbftpc
DDT Graphical Parallel Debugger 2.4 Licensed DDT Home Page /home/beta/ddt
GAMESS Chemistry 1.2009 No-cost Site License GAMESS Home Page /opt/pgi/gamess
Lustre Scalable File System 1.8 GNU GPL Lustre Home Page /opt/lustre
NWChem Chemistry 5.1.1 EMSL (free) NWChem Home Page /home/beta/nwchem_pgi
R Statistical Computing and Graphics 2.9.2 GNU GPL R Home Page /opt/R/bin
Star-P General Parallel Application Development (MATLAB) 2.8 Licensed Star-P Home Page /opt/starp-2.8.0

System Software

Package Topic Area Version License Type Package Home Page User Install Location
Moab Workload Scheduler 5.3.5 License Moab Home Page /opt/moab
alpha N/A TBD Generic alpha Home Page TBD /opt/?
web-server N/A TBD Generic web-server Home Page TBD /opt/?
triton-config N/A TBD Generic triton-config Home Page TBD /opt/?
xen N/A TBD Generic xen Home Page TBD /opt/?
plink N/A TBD Generic plink Home Page TBD /opt/plink
CentOS Operating System 5.3 Open Source CentOS Home Page N/A
hpc N/A TBD Generic hpc Home Page TBD /opt/?
Environment Modules Environment Variable Management 3.2.7 GNU GPL Environment Modules Home Page /opt/modules
kernel-triton N/A TBD Generic triton kernel Home Page TBD /opt/?
base N/A TBD Generic Base Home Page TBD /opt/?
queue-config N/A TBD Generic queue-config Home Page TBD /opt/?
Ganglia N/A 2.5.7 Open Source Ganglia Home Page /opt/ganglia
Nagios N/A 3.2.0 Open Source Nagios Home Page /opt/nagios
myrinet_mx N/A TBD Generic myrinet_mx Home Page TBD /opt/mx
IDL N/A TBD Generic IDL Home Page TBD /opt/idl
TORQUE Resource Manager 2.3.6 Open Source TORQUE Home Page /opt/torque
Gold Allocation Manager 2.1.7 Open Source Gold Home Page /opt/gold

Compilers

Package Topic Area Version License Type Package Home Page User Install Location
Java Compiler 1.6.0_07 Generic Java Home Page /usr/bin/javac
PGI Compilers C and Fortran Compilers 8.0 Licensed (flexlm) PGI Compilers Home Page /opt/pgi
Intel Compilers C and Fortran Compilers 11.1 Licensed (flexlm) Intel Compilers Home Page /opt/intel
FFTW General 3.2.2 GNU GPL FFTW Home Page /opt/pgi/fftw_pgi
NetCDF General 4.0.1 Licensed (free) NetCDF Home Environment Module
openmpi_pgimx N/A TBD Generic openmpi_pgimx Home Page TBD /opt/openmpi_pgimx
nco_pgi N/A TBD Generic nco_pgi Home Page TBD /opt/?
flexlm Compiler License Manager 5.1 Floating Portland Group Home Page /opt/flexlm
Package Topic Area Version License Type Package Home Page User Install Location

Usage Examples

bbFTP

See a discussion of Triton file transfer options, with emphasis on bbFTP, including syntax and examples, on the File & Data Transfer page.

DDT

Usage

/home/beta/ddt/bin/ddt

GAMESS

Usage
PGI:

/opt/pgi/gamess/rungms gamess_input 00 num_procs > output_file

Intel:

/opt/intel/gamess/rungms gamess_input 00 num_procs > output_file

NWChem

Usage

/opt/pgi/mpichmx_pgi/bin/mpirun -np num_nprocs -machinefile $PBS_NODEFILE /home/beta/nwchem_pgi/bin/nwchem input_file > output_file

/opt/pgi/mpichmx_inteli/bin/mpirun -np num_procs -machinefile $PBS_NODEFILE /home/beta/nwchem_intel/bin/nwchem input_file > output_file

NetCDF

Usage Example

module [ load | add ] netcdf

This will put netCDF into your path and add the appropriate environment variables. You will then be able to link the netCDF libraries when compiling C/C++ and Fortran codes.

Star-P

Usage

Please access the PDF documentation suite located on Triton at /opt/starp-2.8.0/server/doc/Manuals. Star-P clients are typically started from a remote workstation.

Modules

Also see local documentation on the Environment Modules page of this site.

Usage Examples

module [ load | unload ] module_name

module [ list | avail ]

module switch module_1 module_2

Discrete Fourier Transform Library (FFTW)

PGI Version

  • PGI C/C++ Compiler
  • PGI Fortran Compiler
Software : FFTW PGI Library
Roll     : fftw_pgi
Location : /opt/pgi/fftw_pgi
Include  : /opt/pgi/fftw_pgi/include
Lib      : /opt/pgi/fftw_pgi/lib
PGI Usage
C interface:

pgcc -o fftw-testc fftw-test.c -I/opt/pgi/fftw_pgi/include -L/opt/pgi/fftw_pgi/lib -lfftw3

FORTRAN interface:

pgf90 -o fftw-testf fftw-test.f -I/opt/pgi/fftw_pgi/include -L/opt/pgi/fftw_pgi/lib -lfftw3

Intel Version

  • INTEL C/C++ Compiler
  • INTEL Fortran Compiler
Software : FFTW Intel Library
Roll     : fftw_intel
Location : /opt/intel/fftw_intel
Include  : /opt/intel/fftw_intel/include
Lib      : /opt/intel/fftw_intel/lib
Intel Usage
C interface:

icc -o fftw-testc fftw-test.c -I/opt/intel/fftw_intel/include -L/opt/intel/fftw_intel/lib -lfftw3

FORTRAN interface:

ifort -o fftw-testf fftw-test.f -I/opt/intel/fftw_intel/include -L/opt/intel/fftw_intel/lib -lfftw3

Intel Compilers

Also see local documentation on the Compiling Jobs and Compiling Parallel Codes pages of this site.

Usage Examples

All compiler executables are located in /opt/intel/Compiler/11.1/046/bin/intel64

C usage:

icpc [c_file or c++_file]

C++ usage:

icc [c_file or c++_file]

Fortran77 usage:

ifort [fortran_file]

Fortran90 usage:

ifort [fortran90_file]

PGI Compilers

Also see local documentation on the Compiling Jobs and Compiling Parallel Codes pages of this site.

Usage Examples

All compiler executables are located in /opt/pgi/linux86-64/8.0/bin

C usage:

pgcc [c_file]

C++ usage:

pgCC [c++_file]

Fortran77 usage:

pgf77 [fortran_file]

Fortran90 usage:

pgf90 [fortran90_file]

R Statistical and Graphics Environment

R is installed on the compute nodes of Triton. It can be run from an interactive session with the command /opt/R/bin/R. You can get an interactive session via qsub -I (or qsub -I -q small if you only need one processor).

Contact Us

Open a Ticket with Triton Resource Support using the Support Ticket Form.

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